Matches in Nanopublications for { ?s ?p ?o <http://purl.org/np/RArAFrdM4rux7Cwl-lT_a4JzGk9tcGItbpd7ykkbD3S2M#assertion>. }
- gene_to_gene_homology_association_subject label "gene to gene homology association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- has_attribute_type label "has attribute type - connects an attribute to a class that describes it" assertion.
- has_confidence_level label "has confidence level - connects an association to a qualitative term denoting the level of confidence" assertion.
- drug_to_gene_association_object label "drug to gene association object - the gene or gene product that is affected by the drug" assertion.
- provider label "provider - person, group, organization or project that provides a piece of information (e.g. a knowledge association)." assertion.
- broad_matches label "broad matches - A list of terms from different schemas or terminology systems that have a broader meaning. Such terms often describe a more general concept from different ontological perspectives." assertion.
- gene_to_go_term_association_object label "gene to go term association object - class describing the activity, process or localization of the gene product" assertion.
- associated_with label "associated with - Expresses a relationship between two named things where the relationship is typically generated statistically (though not in all cases), and is weaker than its child, 'correlated with', but stronger than its parent, 'related to'. This relationship holds between two concepts represented by variables for which a statistical dependence is demonstrated. E.g. the statement “Atrial Fibrillation (Afib) is associated with Myocardial Infarction (MI)” asserts that having Afib is not statistically independent from whether a patient will also have MI. Note that in Translator associations, the subject and object concepts may map exactly to the statistical variables, or represent related entities for which the variables serve as proxies in an Association (e.g. diseases, chemical entities or processes)." assertion.
- genotype_to_disease_association_object label "genotype to disease association object - a disease that is associated with that genotype" assertion.
- cell_line_as_a_model_of_disease_association_subject label "cell line as a model of disease association subject - A cell line derived from an organismal entity with a disease state that is used as a model of that disease." assertion.
- name label "name - A human-readable name for an attribute or entity." assertion.
- subclass_of label "subclass of - holds between two classes where the domain class is a specialization of the range class" assertion.
- entity_to_phenotypic_feature_association_mixin_object label "entity to phenotypic feature association mixin object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- negatively_correlated_with label "negatively correlated with - A relationship that holds between two concepts represented by variables for which a statistical correlation is demonstrated, wherein variable values move in opposite directions (i.e. increased in one or presence of one correlates with a decrease or absence of the other)." assertion.
- has_completed label "has completed - holds between an entity and a process that the entity is capable of and has completed" assertion.
- disease_to_phenotypic_feature_association_object label "disease to phenotypic feature association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- original_subject label "original subject - used to hold the original subject of a relation (or predicate) that an external knowledge source uses before transformation to match the biolink-model specification." assertion.
- variant_to_disease_association_subject label "variant to disease association subject - a sequence variant in which the allele state is associated in some way with the disease state" assertion.
- molecular_activity_to_chemical_entity_association_subject label "molecular activity to chemical entity association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- attribute_name label "attribute name - The human-readable 'attribute name' can be set to a string which reflects its context of interpretation, e.g. SEPIO evidence/provenance/confidence annotation or it can default to the name associated with the 'has attribute type' slot ontology term." assertion.
- is_missense_variant_of label "is missense variant of - holds between a gene and a sequence variant, such the sequence variant results in a different amino acid sequence but where the length is preserved." assertion.
- sequence_variant_qualifier label "sequence variant qualifier - a qualifier used in an association with the variant" assertion.
- has_supporting_study_result label "has supporting study result - connects an association to an instance of supporting study result" assertion.
- material_sample_derivation_association_subject label "material sample derivation association subject - the material sample being described" assertion.
- genotype_to_disease_association_predicate label "genotype to disease association predicate - E.g. is pathogenic for" assertion.
- related_to_at_instance_level label "related to at instance level - Represents a relationship held between two instances of a data classes. Much like an assertion component, in an ABox, these represent facts associated with the conceptual model." assertion.
- relative_frequency_subject_confidence_interval label "relative frequency subject confidence interval - The 99% confidence interval for the relative_frequency_subject calculation (i.e. the range of values within which the true value has a 99% chance of falling)" assertion.
- organism_taxon_to_environment_association_predicate label "organism taxon to environment association predicate - predicate describing the relationship between the taxon and the environment" assertion.
- exon_to_transcript_relationship_object label "exon to transcript relationship object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- in_complex_with label "in complex with - holds between two genes or gene products that are part of (or code for products that are part of) in the same macromolecular complex" assertion.
- gene_to_phenotypic_feature_association_subject label "gene to phenotypic feature association subject - gene in which variation is correlated with the phenotypic feature" assertion.
- gene_to_gene_family_association_object label "gene to gene family association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- genotype_to_entity_association_mixin_subject label "genotype to entity association mixin subject - genotype that is the subject of the association" assertion.
- retrieval_source_upstream_resources label "retrieval source upstream resources - The InformationResources that served as a source for the InformationResource that served as a source for the knowledge expressed in an Edge, or data used to generate this knowledge." assertion.
- severity_qualifier label "severity qualifier - a qualifier used in a phenotypic association to state how severe the phenotype is in the subject" assertion.
- relative_frequency_object label "relative frequency object - The frequency at which subject and object concepts co-occur in records within a dataset/cohort, relative to the frequency at which the object concept appears in these same records." assertion.
- supporting_study_method_type label "supporting study method type - A type of method that was applied in a study used to generate the information used as evidence (e.g. a type of experimental assay, or statistical calculation, or computational analysis)." assertion.
- drug_to_entity_association_mixin_subject label "drug to entity association mixin subject - the drug that is an interactor" assertion.
- disease_to_entity_association_mixin_subject label "disease to entity association mixin subject - disease class" assertion.
- has_constituent label "has constituent - one or more molecular entities within a chemical mixture" assertion.
- description label "description - a human-readable description of an entity" assertion.
- genotype_to_disease_association_subject label "genotype to disease association subject - a genotype that is associated in some way with a disease state" assertion.
- decreases_amount_or_activity_of label "decreases amount or activity of - A grouping mixin to help with searching for all the predicates that decrease the amount or activity of the object." assertion.
- start_interbase_coordinate label "start interbase coordinate - The position at which the subject nucleic acid entity starts on the chromosome or other entity to which it is located on. (ie: the start of the sequence being referenced is 0)." assertion.
- object_location_in_text label "object location in text - Character offsets for the text span(s) in the supporting text corresponding to the object concept of the extracted assertion" assertion.
- chemical_entity_assesses_named_thing_association_subject label "chemical entity assesses named thing association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- associated_environmental_context label "associated environmental context - An attribute that can be applied to an association where the association holds between two entities located or occurring in a particular environment. For example, two microbial taxa may interact in the context of a human gut; a disease may give rise to a particular phenotype in a particular environmental exposure. # TODO: add examples of values for this property." assertion.
- mechanism_of_action label "mechanism of action - a boolean flag to indicate if the edge is part of a path or subgraph of a knowledge graph that constitutes the mechanism of action for a result." assertion.
- organism_to_organism_association_object label "organism to organism association object - An association between two individual organisms." assertion.
- aspect_qualifier label "aspect qualifier - Composes with the core concept to describe new concepts of a different ontological type. e.g. a process in which the core concept participates, a function/activity/role held by the core concept, or a characteristic/quality that inheres in the core concept. The purpose of the aspect slot is to indicate what aspect is being affected in an 'affects' association." assertion.
- disrupts label "disrupts - describes a relationship where one entity degrades or interferes with the structure, function, or occurrence of another." assertion.
- systematic_synonym label "systematic synonym - more commonly used for gene symbols in yeast" assertion.
- variant_to_gene_association_object label "variant to gene association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- author label "author - an instance of one (co-)creator primarily responsible for a written work" assertion.
- chemical_to_chemical_association_object label "chemical to chemical association object - the chemical element that is the target of the statement" assertion.
- organism_taxon_to_organism_taxon_specialization_predicate label "organism taxon to organism taxon specialization predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- anatomical_entity_to_anatomical_entity_ontogenic_association_predicate label "anatomical entity to anatomical entity ontogenic association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- has_participant label "has participant - holds between a process and a continuant, where the continuant is somehow involved in the process" assertion.
- serial_type label "serial type - Should generally be set to an ontology class defined term for 'serial' or 'journal'." assertion.
- small_molecule_id label "small molecule id - A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI" assertion.
- reaction_direction label "reaction direction - the direction of a reaction as constrained by the direction enum (ie: left_to_right, neutral, etc.)" assertion.
- macromolecular_machine_to_molecular_activity_association_object label "macromolecular machine to molecular activity association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- has_side_effect label "has side effect - An unintended, but predictable, secondary effect shown to be correlated with a therapeutic agent, drug or treatment. Side effects happen at normal, recommended doses or treatments, and are unrelated to the intended purpose of the medication." assertion.
- agent_id label "agent id - Different classes of agents have distinct preferred identifiers. For publishers, use the ISBN publisher code. See https://grp.isbn-international.org/ for publisher code lookups. For editors, authors and individual providers, use the individual's ORCID if available; Otherwise, a ScopusID, ResearchID or Google Scholar ID ('GSID') may be used if the author ORCID is unknown. Institutional agents could be identified by an International Standard Name Identifier ('ISNI') code." assertion.
- in_linkage_disequilibrium_with label "in linkage disequilibrium with - holds between two sequence variants, the presence of which are correlated in a population" assertion.
- has_plasma_membrane_part label "has plasma membrane part - Holds between a cell c and a protein complex or protein p if and only if that cell has as part a plasma_membrane[GO:0005886], and that plasma membrane has p as part." assertion.
- editor label "editor - editor of a compiled work such as a book or a periodical (newspaper or an academic journal). Note that in the case of publications which have a containing "published in" node property, the editor association may not be attached directly to the embedded child publication, but only made in between the parent's publication node and the editorial agent of the encompassing publication (e.g. only from the Book referenced by the 'published_in' property of a book chapter Publication node)." assertion.
- chemical_affects_gene_association_object label "chemical affects gene association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- in_taxon label "in taxon - connects an entity to its taxonomic classification. Only certain kinds of entities can be taxonomically classified; see 'thing with taxon'" assertion.
- gene_to_expression_site_association_object label "gene to expression site association object - location in which the gene is expressed" assertion.
- gene_to_expression_site_association_predicate label "gene to expression site association predicate - expression relationship" assertion.
- taxon_to_taxon_association_subject label "taxon to taxon association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- same_as label "same as - holds between two entities that are considered equivalent to each other" assertion.
- has_biomarker label "has biomarker - holds between a disease or phenotypic feature and a measurable chemical entity that is used as an indicator of the presence or state of the disease or feature. # metabolite" assertion.
- disease_or_phenotypic_feature_to_entity_association_mixin_subject label "disease or phenotypic feature to entity association mixin subject - disease or phenotype" assertion.
- gene_to_gene_association_subject label "gene to gene association subject - the subject gene in the association. If the relation is symmetric, subject vs object is arbitrary. We allow a gene product to stand as a proxy for the gene or vice versa." assertion.
- correlated_with label "correlated with - A relationship that holds between two concepts represented by variables for which a statistical dependence is demonstrated using a correlation analysis method." assertion.
- publication_pages label "publication pages - When a 2-tuple of page numbers are provided, they represent the start and end page of the publication within its parent publication context. For books, this may be set to the total number of pages of the book." assertion.
- contributes_to label "contributes to - holds between two entities where the occurrence, existence, or activity of one causes or contributes to the occurrence or generation of the other" assertion.
- is_sequence_variant_of label "is sequence variant of - holds between a sequence variant and a nucleic acid entity" assertion.
- anatomical_entity_to_anatomical_entity_association_subject label "anatomical entity to anatomical entity association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- retrieval_source_resource label "retrieval source resource - The InformationResource that served as a source for the knowledge expressed in an Edge, or data used to generate this knowledge." assertion.
- has_numeric_value label "has numeric value - connects a quantity value to a number" assertion.
- is_nearby_variant_of label "is nearby variant of - holds between a sequence variant and a gene sequence that the variant is genomically close to." assertion.
- socioeconomic_exposure_has_attribute label "socioeconomic exposure has attribute - connects any entity to an attribute" assertion.
- prevents label "prevents - holds between an entity whose application or use reduces the likelihood of a potential outcome. Typically used to associate a chemical entity, exposure, activity, or medical intervention that can prevent the onset a disease or phenotypic feature." assertion.
- variant_as_a_model_of_disease_association_subject label "variant as a model of disease association subject - A variant that has a role in modeling the disease." assertion.
- sequence_feature_relationship_object label "sequence feature relationship object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- aggregator_knowledge_source label "aggregator knowledge source - An intermediate aggregator resource from which knowledge expressed in an Association was retrieved downstream of the original source, on its path to its current serialized form." assertion.
- gene_to_disease_association_subject label "gene to disease association subject - gene in which variation is correlated with the disease, may be protective or causative or associative, or as a model" assertion.
- organism_taxon_to_organism_taxon_association_object label "organism taxon to organism taxon association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- genotype_as_a_model_of_disease_association_subject label "genotype as a model of disease association subject - A genotype that has a role in modeling the disease." assertion.
- caused_by label "caused by - holds between two entities where the occurrence, existence, or activity of one is caused by the occurrence or generation of the other" assertion.
- negated label "negated - if set to true, then the association is negated i.e. is not true" assertion.
- treated_by label "treated by - holds between a disease or phenotypic feature and a therapeutic process or chemical entity that is used to treat the condition" assertion.
- has_part label "has part - holds between wholes and their parts (material entities or processes)" assertion.
- publications label "publications - One or more publications that report the statement expressed in an Association, or provide information used as evidence supporting this statement." assertion.
- knowledge_source label "knowledge source - An Information Resource from which the knowledge expressed in an Association was retrieved, directly or indirectly. This can be any resource through which the knowledge passed on its way to its currently serialized form. In practice, implementers should use one of the more specific subtypes of this generic property." assertion.
- condition_associated_with_gene label "condition associated with gene - holds between a gene and a disease or phenotypic feature that may be influenced, contribute to, or be correlated with the gene or its alleles/products" assertion.
- onset_qualifier label "onset qualifier - a qualifier used in a phenotypic association to state when the phenotype appears is in the subject" assertion.