Matches in Nanopublications for { ?s ?p ?o <http://purl.org/np/RArAFrdM4rux7Cwl-lT_a4JzGk9tcGItbpd7ykkbD3S2M#assertion>. }
- genotype_to_variant_association_object label "genotype to variant association object - gene implicated in genotype" assertion.
- quantifier_qualifier label "quantifier qualifier - A measurable quantity for the object of the association" assertion.
- genome_build label "genome build - The version of the genome on which a feature is located. For example, GRCh38 for Homo sapiens." assertion.
- gene_to_entity_association_mixin_subject label "gene to entity association mixin subject - gene that is the subject of the association" assertion.
- variant_to_gene_association_predicate label "variant to gene association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- behavior_to_behavioral_feature_association_subject label "behavior to behavioral feature association subject - behavior that is the subject of the association" assertion.
- gene_to_gene_product_relationship_subject label "gene to gene product relationship subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- gene_to_pathway_association_object label "gene to pathway association object - the pathway that includes or is affected by the gene or gene product" assertion.
- expresses label "expresses - holds between an anatomical entity and gene or gene product that is expressed there" assertion.
- variant_to_population_association_has_quotient label "variant to population association has quotient - frequency of allele in population, expressed as a number with allele divided by number in reference population, aka allele frequency" assertion.
- variant_to_disease_association_object label "variant to disease association object - a disease that is associated with that variant" assertion.
- disease_or_phenotypic_feature_to_genetic_inheritance_association_predicate label "disease or phenotypic feature to genetic inheritance association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- is_frameshift_variant_of label "is frameshift variant of - holds between a sequence variant and a gene, such the sequence variant causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three." assertion.
- binds label "binds - A causal mechanism mediated by the direct contact between effector and target chemical or biomolecular entity, which form a stable physical interaction." assertion.
- pairwise_molecular_interaction_id label "pairwise molecular interaction id - identifier for the interaction. This may come from an interaction database such as IMEX." assertion.
- supporting_study_date_range label "supporting study date range - The date range over which data was collected in a study that provided evidence for an Association." assertion.
- max_tolerated_dose label "max tolerated dose - The highest dose of a drug or treatment that does not cause unacceptable side effects. The maximum tolerated dose is determined in clinical trials by testing increasing doses on different groups of people until the highest dose with acceptable side effects is found. Also called MTD." assertion.
- reaction_to_participant_association_subject label "reaction to participant association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- serial_id label "serial id - Serials (journals) should have industry-standard identifier such as from ISSN." assertion.
- gene_has_variant_that_contributes_to_disease_association_object label "gene has variant that contributes to disease association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- supporting_text_section_type label "supporting text section type - The section of the supporting text of a Text Mining Result within the supporting document. This is in the form of the name of the document section (e.g., Abstract, Introduction) that contains the supporting text." assertion.
- prevented_by label "prevented by - holds between a potential outcome of which the likelihood was reduced by the application or use of an entity." assertion.
- provided_by label "provided by - The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph." assertion.
- article_iso_abbreviation label "article iso abbreviation - Optional value, if used locally as a convenience, is set to the iso abbreviation of the 'published in' parent." assertion.
- derivative_qualifier label "derivative qualifier - A qualifier that composes with a core subject/object concept to describe something that is derived from the core concept. For example, the qualifier ‘metabolite’ combines with a ‘Chemical X’ core concept to express the composed concept ‘a metabolite of Chemical X’." assertion.
- gene_as_a_model_of_disease_association_subject label "gene as a model of disease association subject - A gene that has a role in modeling the disease. This may be a model organism ortholog of a known disease gene, or it may be a gene whose mutants recapitulate core features of the disease." assertion.
- occurs_together_in_literature_with label "occurs together in literature with - holds between two entities where their co-occurrence is correlated by counts of publications in which both occur, using some threshold of occurrence as defined by the edge provider." assertion.
- disease_has_location label "disease has location - A relationship between a disease and an anatomical entity where the disease has one or more features that are located in that entity." assertion.
- variant_to_population_association_subject label "variant to population association subject - an allele that has a certain frequency in a given population" assertion.
- chemical_affects_gene_association_predicate label "chemical affects gene association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- xenologous_to label "xenologous to - a homology relationship characterized by an interspecies (horizontal) transfer since the common ancestor." assertion.
- functional_association_subject label "functional association subject - gene, product or macromolecular complex that has the function associated with the GO term" assertion.
- has_output label "has output - holds between a process and a continuant, where the continuant is an output of the process" assertion.
- variant_to_disease_association_predicate label "variant to disease association predicate - E.g. is pathogenic for" assertion.
- resource_role label "resource role - The role played by the InformationResource in serving as a source for an Edge. Note that a given Edge should have one and only one 'primary' source, and may have any number of 'aggregator' or 'supporting data' sources." assertion.
- gene_to_gene_family_association_predicate label "gene to gene family association predicate - membership of the gene in the given gene family." assertion.
- molecular_activity_to_pathway_association_predicate label "molecular activity to pathway association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- genotype_to_gene_association_subject label "genotype to gene association subject - parent genotype" assertion.
- exon_to_transcript_relationship_subject label "exon to transcript relationship subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- routes_of_delivery label "routes of delivery - the method or process of administering a pharmaceutical compound to achieve a therapeutic effect in humans or animals." assertion.
- gene_to_phenotypic_feature_association_object label "gene to phenotypic feature association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- genotype_to_genotype_part_association_subject label "genotype to genotype part association subject - parent genotype" assertion.
- anatomical_context_qualifier label "anatomical context qualifier - A statement qualifier representing an anatomical location where an relationship expressed in an association took place (can be a tissue, cell type, or sub-cellular location)." assertion.
- associated_with_resistance_to label "associated with resistance to - A relation that holds between a named thing and a chemical that specifies that the change in the named thing is found to be associated with the degree of resistance to treatment by the chemical." assertion.
- exact_matches label "exact matches - A list of terms from different schemas or terminology systems that have an identical meaning. Such terms often describe the same concept from different ontological perspectives." assertion.
- chemical_entity_or_gene_or_gene_product_regulates_gene_association_subject label "chemical entity or gene or gene product regulates gene association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- organism_taxon_to_environment_association_object label "organism taxon to environment association object - the environment in which the organism occurs" assertion.
- macromolecular_machine_to_cellular_component_association_object label "macromolecular machine to cellular component association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- form_or_variant_qualifier label "form or variant qualifier - A qualifier that composes with a core subject/object concept to define a specific type, variant, alternative version of this concept. The composed concept remains a subtype or instance of the core concept. For example, the qualifier ‘mutation’ combines with the core concept ‘Gene X’ to express the compose concept ‘a mutation of Gene X’." assertion.
- information_content_entity_to_named_thing_association_object label "information content entity to named thing association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- has_phenotype label "has phenotype - holds between a biological entity and a phenotype, where a phenotype is construed broadly as any kind of quality of an organism part, a collection of these qualities, or a change in quality or qualities (e.g. abnormally increased temperature). In SNOMEDCT, disorders with keyword 'characterized by' should translate into this predicate." assertion.
- participates_in label "participates in - holds between a continuant and a process, where the continuant is somehow involved in the process" assertion.
- authors label "authors - connects an publication to the list of authors who contributed to the publication. This property should be a comma-delimited list of author names. It is recommended that an author's name be formatted as "surname, firstname initial.". Note that this property is a node annotation expressing the citation list of authorship which might typically otherwise be more completely documented in biolink:PublicationToProviderAssociation defined edges which point to full details about an author and possibly, some qualifiers which clarify the specific status of a given author in the publication." assertion.
- molecular_activity_to_pathway_association_object label "molecular activity to pathway association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- clinical_modifier_qualifier label "clinical modifier qualifier - the method or process of administering a pharmaceutical compound to achieve a therapeutic effect in humans or animals." assertion.
- coexists_with label "coexists with - holds between two entities that are co-located in the same aggregate object, process, or spatio-temporal region" assertion.
- part_of label "part of - holds between parts and wholes (material entities or processes)" assertion.
- orthologous_to label "orthologous to - a homology relationship between entities (typically genes) that diverged after a speciation event." assertion.
- retrieval_source_resource_role label "retrieval source resource role - The role of the InformationResource in the retrieval of the knowledge expressed in an Edge, or data used to generate this knowledge." assertion.
- has_adverse_event label "has adverse event - An untoward medical occurrence in a patient or clinical investigation subject that happens during treatment with a therapeutic agent. Adverse events may be caused by something other than the drug or therapy being given and may include abnormal laboratory finding, symptoms, or diseases temporally associated with the treatment, whether or not considered related to the treatment. Adverse events are unintended effects that occur when a medication is administered correctly." assertion.
- reaction_to_catalyst_association_object label "reaction to catalyst association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- book_id label "book id - Books should have industry-standard identifier such as from ISBN." assertion.
- chemical_entity_to_entity_association_mixin_subject label "chemical entity to entity association mixin subject - the chemical entity that is an interactor" assertion.
- has_member label "has member - Defines a mereological relation between a collection and an item." assertion.
- material_sample_to_entity_association_mixin_subject label "material sample to entity association mixin subject - the material sample being described" assertion.
- has_quantitative_value label "has quantitative value - connects an attribute to a value" assertion.
- synonym label "synonym - Alternate human-readable names for a thing" assertion.
- variant_to_gene_expression_association_predicate label "variant to gene expression association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- supporting_document_type label "supporting document type - The document type (e.g., Journal Article, Case Study, Preprint) for the supporting document used in a Text Mining Result." assertion.
- occurs_in label "occurs in - holds between a process and a material entity or site within which the process occurs" assertion.
- organism_taxon_to_entity_association_subject label "organism taxon to entity association subject - organism taxon that is the subject of the association" assertion.
- original_object label "original object - used to hold the original object of a relation (or predicate) that an external knowledge source uses before transformation to match the biolink-model specification." assertion.
- genetic_association label "genetic association - Co-occurrence of a certain allele of a genetic marker and the phenotype of interest in the same individuals at above-chance level" assertion.
- molecular_activity_has_input label "molecular activity has input - A chemical entity that is the input for the reaction" assertion.
- genotype_to_variant_association_predicate label "genotype to variant association predicate - the relationship type used to connect genotype to gene" assertion.
- published_in label "published in - CURIE identifier of a broader publication context within which the publication may be placed, e.g. a specified book or journal." assertion.
- supporting_data_source label "supporting data source - An Information Resource from which data was retrieved and subsequently used as evidence to generate the knowledge expressed in an Association (e.g. through computation on, reasoning or inference over the retrieved data)." assertion.
- is_metabolite label "is metabolite - indicates whether a molecular entity is a metabolite" assertion.
- temporal_context_qualifier label "temporal context qualifier - a constraint of time placed upon the truth value of an association. for time intervales, use temporal interval qualifier." assertion.
- chemical_affects_gene_association_causal_mechanism_qualifier label "chemical affects gene association causal mechanism qualifier - A statement qualifier representing a type of molecular control mechanism through which an effect of a chemical on a gene or gene product is mediated (e.g. 'agonism', 'inhibition', 'allosteric modulation', 'channel blocker')" assertion.
- population_context_qualifier label "population context qualifier - a biological population (general, study, cohort, etc.) with a specific set of characteristics to constrain an association." assertion.
- book_chapter_published_in label "book chapter published in - The enclosing parent book containing the chapter should have industry-standard identifier from ISBN." assertion.
- chemical_to_pathway_association_object label "chemical to pathway association object - the pathway that is affected by the chemical" assertion.
- entity_to_disease_association_mixin_object label "entity to disease association mixin object - disease" assertion.
- exacerbates label "exacerbates - A relationship between an entity (e.g. a chemical, environmental exposure, or some form of genetic variation) and a condition (a phenotype or disease), where the presence of the entity worsens some or all aspects of the condition." assertion.
- contributor_association_predicate label "contributor association predicate - generally one of the predicate values 'provider', 'publisher', 'editor' or 'author'" assertion.
- chemically_similar_to label "chemically similar to - holds between one small molecule entity and another that it approximates for purposes of scientific study, in virtue of its exhibiting similar features of the studied entity." assertion.
- exposure_event_to_phenotypic_feature_association_subject label "exposure event to phenotypic feature association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- supporting_document_year label "supporting document year - The document year (typically the publication year) for the supporting document used in a Text Mining Result." assertion.
- increases_response_to label "increases response to - holds between two chemical entities where the action or effect of one increases the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) to the other" assertion.
- has_evidence label "has evidence - connects an association to an instance of supporting evidence" assertion.
- sequence_variant_has_biological_sequence label "sequence variant has biological sequence - The state of the sequence w.r.t a reference sequence" assertion.
- overlaps label "overlaps - holds between entities that overlap in their extents (materials or processes)" assertion.
- has_attribute label "has attribute - connects any entity to an attribute" assertion.
- molecular_activity_to_molecular_activity_association_object label "molecular activity to molecular activity association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- gene_to_pathway_association_subject label "gene to pathway association subject - the gene or gene product entity that participates or influences the pathway" assertion.
- agent_name label "agent name - it is recommended that an author's 'name' property be formatted as "surname, firstname initial."" assertion.
- manifestation_of label "manifestation of - that part of a phenomenon which is directly observable or visibly expressed, or which gives evidence to the underlying process; used in SemMedDB for linking things like dysfunctions and processes to some disease or syndrome" assertion.
- chemical_entity_assesses_named_thing_association_predicate label "chemical entity assesses named thing association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- organism_taxon_to_organism_taxon_specialization_object label "organism taxon to organism taxon specialization object - the more general taxon" assertion.