Matches in Nanopublications for { ?s ?p ?o <http://purl.org/np/RArAFrdM4rux7Cwl-lT_a4JzGk9tcGItbpd7ykkbD3S2M#assertion>. }
- is_supplement label "is supplement - " assertion.
- is_toxic label "is toxic - " assertion.
- chemical_to_disease_or_phenotypic_feature_association_object label "chemical to disease or phenotypic feature association object - the disease or phenotype that is affected by the chemical" assertion.
- id label "id - A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI" assertion.
- association_type label "association type - rdf:type of biolink:Association should be fixed at rdf:Statement" assertion.
- expected_count label "expected count - The expected (calculated) number of instances in a dataset/cohort whose records contain both the subject and object concept of an association if the subject and object concepts are independent." assertion.
- keywords label "keywords - keywords tagging a publication" assertion.
- located_in label "located in - holds between a material entity and a material entity or site within which it is located (but of which it is not considered a part)" assertion.
- latitude label "latitude - latitude" assertion.
- likelihood_associated_with label "likelihood associated with - " assertion.
- longitude label "longitude - longitude" assertion.
- bonferonni_adjusted_p_value label "bonferonni adjusted p value - The Bonferroni correction is an adjustment made to P values when several dependent or independent statistical tests are being performed simultaneously on a single data set. To perform a Bonferroni correction, divide the critical P value (α) by the number of comparisons being made. P is always italicized and capitalized. The actual P value* should be expressed (P=. 04) rather than expressing a statement of inequality (P<. 05), unless P<." assertion.
- mesh_terms label "mesh terms - mesh terms tagging a publication" assertion.
- molecular_activity_to_molecular_activity_association_subject label "molecular activity to molecular activity association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- narrow_match label "narrow match - a list of terms from different schemas or terminology systems that have a narrower, more specific meaning. Narrower terms are typically shown as children in a hierarchy or tree." assertion.
- gene_to_gene_family_association_subject label "gene to gene family association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- supporting_documents label "supporting documents - One or more referencable documents that report the statement expressed in an Association, or provide information used as evidence supporting this statement." assertion.
- transcript_to_gene_relationship_subject label "transcript to gene relationship subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- has_topic label "has topic - Connects a node to a vocabulary term or ontology class that describes some aspect of the entity. In general specific characterization is preferred. See https://github.com/biolink/biolink-model/issues/238" assertion.
- anatomical_entity_to_anatomical_entity_ontogenic_association_object label "anatomical entity to anatomical entity ontogenic association object - the structure at an earlier time" assertion.
- chemical_gene_interaction_association_subject label "chemical gene interaction association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- primary_knowledge_source label "primary knowledge source - The most upstream source of the knowledge expressed in an Association that an implementer can identify. Performing a rigorous analysis of upstream data providers is expected; every effort is made to catalog the most upstream source of data in this property. Only one data source should be declared primary in any association. "aggregator knowledge source" can be used to caputre non-primary sources." assertion.
- variant_to_population_association_has_count label "variant to population association has count - number in object population that carry a particular allele, aka allele count" assertion.
- increases_amount_or_activity_of label "increases amount or activity of - A grouping mixin to help with searching for all the predicates that increase the amount or activity of the object." assertion.
- functional_association_object label "functional association object - class describing the activity, process or localization of the gene product" assertion.
- has_molecular_consequence label "has molecular consequence - connects a sequence variant to a class describing the molecular consequence. E.g. SO:0001583" assertion.
- druggable_gene_to_disease_association_predicate label "druggable gene to disease association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- organism_taxon_to_organism_taxon_specialization_subject label "organism taxon to organism taxon specialization subject - the more specific taxon" assertion.
- gene_to_gene_product_relationship_object label "gene to gene product relationship object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- statement_qualifier label "statement qualifier - " assertion.
- summary label "summary - executive summary of a publication" assertion.
- symbol label "symbol - Symbol for a particular thing" assertion.
- food_component_of label "food component of - holds between a one or more chemical entities present in food, irrespective of nutritional value (i.e. could also be a contaminant or additive)" assertion.
- timepoint label "timepoint - a point in time" assertion.
- trade_name label "trade name - " assertion.
- transcribed_to label "transcribed to - inverse of transcribed from" assertion.
- translation_of label "translation of - inverse of translates to" assertion.
- chemical_to_entity_association_mixin_subject label "chemical to entity association mixin subject - the chemical entity or entity that is an interactor" assertion.
- response_affected_by label "response affected by - holds between two chemical entities where the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) of one is affected by the action of the other." assertion.
- issue label "issue - issue of a newspaper, a scientific journal or magazine for reference purpose" assertion.
- organism_taxon_to_organism_taxon_association_subject label "organism taxon to organism taxon association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- decreases_response_to label "decreases response to - holds between two chemical entities where the action or effect of one decreases the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) to the other" assertion.
- has_gene_or_gene_product label "has gene or gene product - connects an entity with one or more gene or gene products" assertion.
- gene_expression_mixin_quantifier_qualifier label "gene expression mixin quantifier qualifier - Optional quantitative value indicating degree of expression." assertion.
- xref label "xref - Alternate CURIEs for a thing" assertion.
- concept_count_object label "concept count object - The number of instances in a dataset/cohort whose records contain the concept in the object slot of an association." assertion.
- transcribed_from label "transcribed from - x is transcribed from y if and only if x is synthesized from template y" assertion.
- chemical_to_chemical_derivation_association_subject label "chemical to chemical derivation association subject - the upstream chemical entity" assertion.
- molecular_activity_has_output label "molecular activity has output - A chemical entity that is the output for the reaction" assertion.
- publication_id label "publication id - Different kinds of publication subtypes will have different preferred identifiers (curies when feasible). Precedence of identifiers for scientific articles is as follows: PMID if available; DOI if not; actual alternate CURIE otherwise. Enclosing publications (i.e. referenced by 'published in' node property) such as books and journals, should have industry-standard identifier such as from ISBN and ISSN." assertion.
- information_content_entity_to_named_thing_association_predicate label "information content entity to named thing association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- base_coordinate label "base coordinate - A position in the base coordinate system. Base coordinates start at position 1 instead of position 0." assertion.
- concept_pair_count label "concept pair count - The number of instances in a dataset/cohort whose records contain both the subject and object concept of an association." assertion.
- has_receptor label "has receptor - the organism or organism part being exposed" assertion.
- is_metabolite_of label "is metabolite of - holds between two molecular entities in which the first one is derived from the second one as a product of metabolism" assertion.
- gene_to_gene_homology_association_predicate label "gene to gene homology association predicate - homology relationship type" assertion.
- has_percentage label "has percentage - equivalent to has quotient multiplied by 100" assertion.
- pairwise_molecular_interaction_object label "pairwise molecular interaction object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- molecular_activity_to_chemical_entity_association_object label "molecular activity to chemical entity association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- gene_to_disease_association_object label "gene to disease association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- anatomical_entity_to_anatomical_entity_ontogenic_association_subject label "anatomical entity to anatomical entity ontogenic association subject - the structure at a later time" assertion.
- has_total label "has total - total number of things in a particular reference set" assertion.
- has_input label "has input - holds between a process and a continuant, where the continuant is an input into the process" assertion.
- reaction_side label "reaction side - the side of a reaction being modeled (ie: left or right)" assertion.
- population_to_population_association_subject label "population to population association subject - the population that form the subject of the association" assertion.
- information_content_entity_to_named_thing_association_subject label "information content entity to named thing association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- superclass_of label "superclass of - holds between two classes where the domain class is a super class of the range class" assertion.
- genetically_interacts_with label "genetically interacts with - holds between two genes whose phenotypic effects are dependent on each other in some way - such that their combined phenotypic effects are the result of some interaction between the activity of their gene products. Examples include epistasis and synthetic lethality." assertion.
- stage_qualifier label "stage qualifier - stage during which gene or protein expression of takes place." assertion.
- genotype_to_phenotypic_feature_association_subject label "genotype to phenotypic feature association subject - genotype that is associated with the phenotypic feature" assertion.
- interbase_coordinate label "interbase coordinate - A position in interbase coordinates. Interbase coordinates start at position 0 instead of position 1. This is applied to a sequence localization edge." assertion.
- contraindicated_for label "contraindicated for - Holds between a drug and a disease or phenotype, such that a person with that disease should not be treated with the drug." assertion.
- behavior_to_behavioral_feature_association_object label "behavior to behavioral feature association object - behavioral feature that is the object of the association" assertion.
- similar_to label "similar to - holds between an entity and some other entity with similar features." assertion.
- model_to_disease_association_mixin_predicate label "model to disease association mixin predicate - The relationship to the disease" assertion.
- gene_fusion_with label "gene fusion with - holds between two independent genes that have fused through translocation, interstitial deletion, or chromosomal inversion to form a new, hybrid gene. Fusion genes are often implicated in various neoplasms and cancers." assertion.
- biomarker_for label "biomarker for - holds between a measurable chemical entity and a disease or phenotypic feature, where the entity is used as an indicator of the presence or state of the disease or feature." assertion.
- sequence_variant_has_gene label "sequence variant has gene - Each allele can be associated with any number of genes" assertion.
- anatomical_entity_to_anatomical_entity_part_of_association_predicate label "anatomical entity to anatomical entity part of association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes." assertion.
- expression_site label "expression site - location in which gene or protein expression takes place. May be cell, tissue, or organ." assertion.
- paralogous_to label "paralogous to - a homology relationship that holds between entities (typically genes) that diverged after a duplication event." assertion.
- diagnoses label "diagnoses - a relationship that identifies the nature of (an illness or other problem) by examination of the symptoms." assertion.
- chemical_to_chemical_derivation_association_object label "chemical to chemical derivation association object - the downstream chemical entity" assertion.
- chemical_to_chemical_derivation_association_catalyst_qualifier label "chemical to chemical derivation association catalyst qualifier - this connects the derivation edge to the chemical entity that catalyzes the reaction that causes the subject chemical to transform into the object chemical." assertion.
- temporally_related_to label "temporally related to - holds between two entities with a temporal relationship" assertion.
- transcript_to_gene_relationship_object label "transcript to gene relationship object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- precedes label "precedes - holds between two processes, where one completes before the other begins" assertion.
- creation_date label "creation date - date on which an entity was created. This can be applied to nodes or edges" assertion.
- update_date label "update date - date on which an entity was updated. This can be applied to nodes or edges" assertion.
- is_active_ingredient_of label "is active ingredient of - holds between a molecular entity and a drug, in which the former is a part of the latter, and is a biologically active component" assertion.
- part_qualifier label "part qualifier - defines a specific part/component of the core concept (used in cases there this specific part has no IRI we can use to directly represent it, e.g. 'ESR1 transcript' q: polyA tail)." assertion.
- mapped_predicate label "mapped predicate - The predicate that is being replaced by the fully qualified representation of predicate + subject and object qualifiers. Only to be used in test data and mapping data to help with the transition to the fully qualified predicate model. Not to be used in knowledge graphs." assertion.
- associated_with_sensitivity_to label "associated with sensitivity to - A relation that holds between a named thing and a chemical that specifies that the change in the named thing is found to be associated with the degree of sensitivity to treatment by the chemical." assertion.
- chemical_to_pathway_association_subject label "chemical to pathway association subject - the chemical entity that is affecting the pathway" assertion.
- derives_from label "derives from - holds between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity" assertion.
- gene_to_go_term_association_subject label "gene to go term association subject - gene, product or macromolecular complex that has the function associated with the GO term" assertion.
- anatomical_entity_to_anatomical_entity_part_of_association_subject label "anatomical entity to anatomical entity part of association subject - the part" assertion.
- ln_ratio label "ln ratio - the natural log of the ratio of co-occurrence to expected" assertion.
- chemical_gene_interaction_association_object label "chemical gene interaction association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object." assertion.
- translates_to label "translates to - x (amino acid chain/polypeptide) is the ribosomal translation of y (transcript) if and only if a ribosome reads y (transcript) through a series of triplet codon-amino acid adaptor activities (GO:0030533) and produces x (amino acid chain/polypeptide)" assertion.